QMVIEWS: Jmol 001: Loading a Structure File from Disk Through CGI

Dienstag, 21. Juni 2011

Jmol 001: Loading a Structure File from Disk Through CGI

The function below allow the user to load a structure into a Jmol applet.

#!/usr/bin/python

print "Content-type: text/html\n\n"

import cgi
import cgitb
cgitb.enable()

def getJmolPage(target):
   newpage  = ''
   newpage += '<html>\n'
   newpage += '  <head>\n'
   newpage += '      <title>Load PDB Form</title>\n'
   newpage += '      <script src="./jmolDir/Jmol.js" type="text/javascript"></scri
pt>\n'
   newpage += '  </head> \n'
   newpage += '  <body> \n'
   newpage += '  <script type="text/javascript">\n'
   newpage += '  jmolInitialize("./jmolDir");\n'
   newpage += '  jmolApplet(400, "load ../x_output/%s.pdb");\n'
   newpage += '  </script><br />\n'
   newpage += '  </body>\n'
   newpage += '</html>\n'

   return newpage % (target)

if __name__ == '__main__':
   form = cgi.FieldStorage()
   target = form['PDBID'].value
   print getJmolPage(target)

Note, all HTML code had to be escaped in order to be posted on the blog.

QMVIEWS

Dienstag, 21. Juni 2011

Jmol 001: Loading a Structure File from Disk Through CGI

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